PTSDgene database

SNP Report

Basic Info
Name rs1571138 dbSNP Ensembl
Location 1:46429969 - 46429969(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.277356
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000446499, ENST00000606395)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000243167)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000243167)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
FAAHP1 fatty acid amide hydrolase pseudogene 1 1p33 Mapped by LD-proxy, rSNP target

SNPs in LD with rs1571138 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1 Yes Adipose Subcutaneous cis GTEx