PTSDgene database

SNP Report

Basic Info
Name rs1509856 dbSNP Ensembl
Location 8:130779582 - 130779582(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.495208
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000377928, ENST00000286355)
SIFT Annotation tolerated_-_low_confidence; deleterious_-_low_confidence
SIFT Variant Effect tolerated_-_low_confidence(ENST00000286355); deleterious_-_low_confidence(ENST00000377928, ENST00000286355)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000377928, ENST00000286355)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADCY8 adenylate cyclase 8 (brain) 8q24 1(0/0/1)

SNPs in LD with rs1509856 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx