SNP Report
Basic Info
| Name | rs1500899 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 8:95522762 - 95522762(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | T | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.297125 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000517437, ENST00000519366, ENST00000521905); non_coding_transcript_variant(ENST00000517437, ENST00000519366, ENST00000521905) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000286688) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000286688) | ||
| rSNP? | No Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Inactive region | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Xie, P.,2013 | Lifetime PTSD | Trauma Exposed African Americans: in GWAS,P-value=9.94E-06,i...... Trauma Exposed African Americans: in GWAS,P-value=9.94E-06,in replication,P-value=NT,in combined, P-value=NT. More... | No significant signals were observed in the African American...... No significant signals were observed in the African American part of the sample. Genome-wide association study analyses restricted to trauma-exposed individuals yielded very similar results. More... | Trend |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| C8orf37 | chromosome 8 open reading frame 37 | 8q22.1 | 1(0/0/1) |
| C8orf37-AS1 | C8orf37 antisense RNA 1 | 8q22.1 | Mapped by Literature SNP |
SNPs in LD with rs1500899 (count: 0)
SNP related eQTL (count: 1)