PTSDgene database

SNP Report

Basic Info
Name rs1432623 dbSNP Ensembl
Location 5:148824445 - 148824445(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.346645
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000305988)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000305988)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000305988)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Enhancers;Weak transcription;Flanking Active TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADRB2 adrenoceptor beta 2 5q31-q32 1(0/1/0)

SNPs in LD with rs1432623 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx