PTSDgene database

SNP Report

Basic Info
Name rs1418718 dbSNP Ensembl
Location 1:192807284 - 192807284(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.39377
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000487236, ENST00000464302, ENST00000235382, ENST00000483295)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000235382)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000235382)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Weak transcription;Enhancers;Flanking Active TSS;Active TSS;Bivalent/Poised TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TROVE2 TROVE domain family member 2 1q31 rSNP target
UCHL5 ubiquitin C-terminal hydrolase L5 1q32 rSNP target
RGS2 regulator of G-protein signaling 2 1q31 7(2/5/0)

SNPs in LD with rs1418718 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LURAP1 No Adipose Subcutaneous cis GTEx