PTSDgene database

SNP Report

Basic Info
Name rs1396862 dbSNP Ensembl
Location 17:45825631 - 45825631(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.0860623
Annotation non_coding_transcript_exon_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect non_coding_transcript_exon_variant(ENST00000634876); upstream_gene_variant(ENST00000581479); intron_variant(ENST00000352855, ENST00000398285, ENST00000580955, ENST00000293493, ENST00000619154, ENST00000583888, ENST00000634540, ENST00000314537, ENST00000582766, ENST00000577353, ENST00000339069, ENST00000347197); NMD_transcript_variant(ENST00000580955, ENST00000583888, ENST00000347197); non_coding_transcript_variant(ENST00000634876, ENST00000582766)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000293493, ENST00000314537, ENST00000339069, ENST00000352855, ENST00000398285, ENST00000577353, ENST00000634540)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000293493, ENST00000314537, ENST00000339069, ENST00000352855, ENST00000398285, ENST00000577353, ENST00000634540)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers;Weak transcription;Bivalent Enhancer
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
CRHR1 corticotropin releasing hormone receptor 1 17q21.31 12(6/6/0)
MAPT-AS1 MAPT antisense RNA 1 17q21.31 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs1396862 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx