PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs1393852 dbSNP Ensembl
Location	4:165947355 - 165947355(+)
Variant Seq	C
Ancestral Allele	C
Ref Seq	T
Minor Allele Frequence	0.169329
Annotation	intron_variant; NMD_transcript_variant
Variant Effect	intron_variant(ENST00000509505, ENST00000507499, ENST00000513213, ENST00000506144, ENST00000061240, ENST00000504560); NMD_transcript_variant(ENST00000509505, ENST00000504560)
SIFT Annotation	tolerated_-_low_confidence; deleterious_-_low_confidence; deleterious
SIFT Variant Effect	tolerated_-_low_confidence(ENST00000061240, ENST00000507499); deleterious_-_low_confidence(ENST00000504560, ENST00000513213); deleterious(ENST00000509505)
PolyPhen Annotation	benign; possibly_damaging
PolyPhen Variant Effect	benign(ENST00000504560, ENST00000061240, ENST00000507499); possibly_damaging(ENST00000513213, ENST00000509505)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Strong transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
TLL1	tolloid like 1	4q32.3	4(2/2/0)

SNPs in LD with rs1393852 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
CRHR1-IT1	Yes	Adipose Subcutaneous	cis	GTEx