SNP Report
Name | rs1380630 dbSNP Ensembl | ||
---|---|---|---|
Location | 4:136766916 - 136766916(+) | ||
Variant Seq | C | ||
Ancestral Allele | T | ||
Ref Seq | T | ||
Minor Allele Frequence | 0.157748 | ||
Annotation | upstream_gene_variant | ||
SIFT Annotation | deleterious | ||
SIFT Variant Effect | deleterious(ENST00000421491) | ||
PolyPhen Annotation | possibly_damaging | ||
PolyPhen Variant Effect | possibly_damaging(ENST00000421491) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | n/a | ||
Chromatin State | Weak transcription | ||
No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
Source | Literature |
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.