PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs1362621 dbSNP Ensembl
Location	16:55654572 - 55654572(+)
Variant Seq	A
Ancestral Allele	A
Ref Seq	G
Minor Allele Frequence	0.23742
Annotation	upstream_gene_variant
Variant Effect	upstream_gene_variant(ENST00000566163, ENST00000568943, ENST00000379906, ENST00000219833, ENST00000561820, ENST00000414754, ENST00000568655, ENST00000568529)
SIFT Annotation	tolerated
SIFT Variant Effect	tolerated(ENST00000219833, ENST00000568943, ENST00000561820, ENST00000379906, ENST00000414754, ENST00000566163, ENST00000568529, ENST00000568655)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000219833, ENST00000568943, ENST00000561820, ENST00000379906, ENST00000414754, ENST00000566163, ENST00000568529, ENST00000568655)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	TF binding region
Chromatin State	Bivalent Enhancer
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
SLC6A2	solute carrier family 6 (neurotransmitter transporter), member 2	16q12.2	13(4/9/0)

SNPs in LD with rs1362621 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-707O23.5	No	Adipose Subcutaneous	cis	GTEx