PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs1362620 dbSNP Ensembl
Location	16:55654462 - 55654462(+)
Variant Seq	C
Ancestral Allele	C
Ref Seq	T
Minor Allele Frequence	0.236222
Annotation	upstream_gene_variant
Variant Effect	upstream_gene_variant(ENST00000568655, ENST00000379906, ENST00000561820, ENST00000566163, ENST00000568943, ENST00000568529, ENST00000219833, ENST00000414754)
SIFT Annotation	deleterious
SIFT Variant Effect	deleterious(ENST00000568529, ENST00000379906, ENST00000566163, ENST00000219833, ENST00000414754, ENST00000561820, ENST00000568655, ENST00000568943)
PolyPhen Annotation	benign; possibly_damaging; probably_damaging
PolyPhen Variant Effect	benign(ENST00000414754); possibly_damaging(ENST00000561820); probably_damaging(ENST00000568529, ENST00000379906, ENST00000566163, ENST00000219833, ENST00000568655, ENST00000568943)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	TF binding region
Chromatin State	Bivalent Enhancer
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
SLC6A2	solute carrier family 6 (neurotransmitter transporter), member 2	16q12.2	13(4/9/0)

SNPs in LD with rs1362620 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-707O23.5	No	Adipose Subcutaneous	cis	GTEx