PTSDgene database

SNP Report

Basic Info
Name rs1362620 dbSNP Ensembl
Location 16:55654462 - 55654462(+)
Variant Seq C
Ancestral Allele C
Ref Seq T
Minor Allele Frequence 0.236222
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000568655, ENST00000379906, ENST00000561820, ENST00000566163, ENST00000568943, ENST00000568529, ENST00000219833, ENST00000414754)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000568529, ENST00000379906, ENST00000566163, ENST00000219833, ENST00000414754, ENST00000561820, ENST00000568655, ENST00000568943)
PolyPhen Annotation benign; possibly_damaging; probably_damaging
PolyPhen Variant Effect benign(ENST00000414754); possibly_damaging(ENST00000561820); probably_damaging(ENST00000568529, ENST00000379906, ENST00000566163, ENST00000219833, ENST00000568655, ENST00000568943)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Bivalent Enhancer
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A2 solute carrier family 6 (neurotransmitter transporter), member 2 16q12.2 13(4/9/0)

SNPs in LD with rs1362620 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx