PTSDgene database

SNP Report

Basic Info
Name rs129915 dbSNP Ensembl
Location 9:133659796 - 133659796(+)
Variant Seq G
Ancestral Allele G
Ref Seq A
Minor Allele Frequence 0.269768
Annotation downstream_gene_variant; upstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000371868, ENST00000371872, ENST00000422262, ENST00000393056, ENST00000439388, ENST00000469828); upstream_gene_variant(ENST00000425189)
SIFT Annotation tolerated_-_low_confidence
SIFT Variant Effect tolerated_-_low_confidence(ENST00000371868)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000371868)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region;lncRNA
Chromatin State Bivalent Enhancer;Enhancers;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DBH-AS1 DBH antisense RNA 1 9q34.2 Mapped by Literature SNP, Mapped by LD-proxy
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 9q34 4(0/4/0)
SARDH sarcosine dehydrogenase 9q33-q34 Mapped by LD-proxy

SNPs in LD with rs129915 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx