PTSDgene database

SNP Report

Basic Info
Name rs129888 dbSNP Ensembl
Location 9:133663325 - 133663325(+)
Variant Seq C
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.227636
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000371868, ENST00000469828, ENST00000422262, ENST00000439388, ENST00000371872, ENST00000393056)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000371868, ENST00000371872, ENST00000439388)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000371868, ENST00000371872, ENST00000439388)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Genic enhancers;Strong transcription;Bivalent Enhancer
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DBH dopamine beta-hydroxylase (dopamine beta-monooxygenase) 9q34 4(0/4/0)
SARDH sarcosine dehydrogenase 9q33-q34 Mapped by LD-proxy

SNPs in LD with rs129888 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx