SNP Report

Basic Info
Name |
rs12942994
dbSNP
Ensembl
|
Location |
17:45797964 - 45797964(+) |
Variant Seq |
C |
Ancestral Allele |
T |
Ref Seq |
T |
Minor Allele Frequence |
0.130791 |
Annotation |
downstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
Variant Effect |
downstream_gene_variant(ENST00000634876); intron_variant(ENST00000634540, ENST00000352855, ENST00000339069, ENST00000587305, ENST00000577353, ENST00000619154, ENST00000582766, ENST00000293493, ENST00000347197, ENST00000314537, ENST00000398285); NMD_transcript_variant(ENST00000347197); non_coding_transcript_variant(ENST00000587305, ENST00000582766)
|
SIFT Annotation |
tolerated_-_low_confidence; deleterious_-_low_confidence
|
SIFT Variant Effect |
tolerated_-_low_confidence(ENST00000314537, ENST00000398285, ENST00000577353, ENST00000293493); deleterious_-_low_confidence(ENST00000619154, ENST00000347197, ENST00000352855)
|
PolyPhen Annotation |
unknown; benign; possibly_damaging
|
PolyPhen Variant Effect |
unknown(ENST00000619154); benign(ENST00000347197, ENST00000398285, ENST00000352855, ENST00000577353, ENST00000293493); possibly_damaging(ENST00000314537)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription;ZNF genes & repeats
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 2)

SNPs in LD with rs12942994 (count: 0)

SNP related eQTL (count: 1)