SNP Report
Basic Info
| Name | rs12592749 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 15:27497255 - 27497255(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.150559 | ||
| Annotation | intron_variant; non_coding_transcript_variant | ||
| Variant Effect | intron_variant(ENST00000333743, ENST00000556642, ENST00000615808, ENST00000554696); non_coding_transcript_variant(ENST00000556642) | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000333743, ENST00000554696, ENST00000615808, ENST00000555083) | ||
| PolyPhen Annotation | probably_damaging | ||
| PolyPhen Variant Effect | probably_damaging(ENST00000333743, ENST00000554696, ENST00000615808, ENST00000555083) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 1; Trend: 0) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Nelson, E. C.,2014 | PTSD | P-value=0.012, OR=1.39 P-value=0.012, OR=1.39 | Although the association of this SNP is of considerably lowe...... Although the association of this SNP is of considerably lower magnitude, it is interesting to note. More... | Non-significant |
SNP related genes (count: 1)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| GABRG3 | gamma-aminobutyric acid (GABA) A receptor, gamma 3 | 15q12 | 1(0/1/0) |
SNPs in LD with rs12592749 (count: 3)
Literature-origin SNPs (count: 0)
LD-proxies (count: 3)
SNP related eQTL (count: 1)