PTSDgene database

SNP Report

Basic Info
Name rs12292915 dbSNP Ensembl
Location 11:18016571 - 18016571(+)
Variant Seq A
Ancestral Allele A
Ref Seq C
Minor Allele Frequence 0.44389
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000417164, ENST00000525406, ENST00000250018); upstream_gene_variant(ENST00000532389, ENST00000529728, ENST00000532265, ENST00000533328, ENST00000524716, ENST00000532212, ENST00000530613, ENST00000525422, ENST00000528200, ENST00000530925, ENST00000265965, ENST00000527494); intron_variant(ENST00000525523); non_coding_transcript_variant(ENST00000525523)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000250018)
PolyPhen Annotation unknown
PolyPhen Variant Effect unknown(ENST00000533328)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target
TPH1 tryptophan hydroxylase 1 11p15.3-p14 5(1/4/0)

SNPs in LD with rs12292915 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx