PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs11978620 dbSNP Ensembl
Location	7:31090247 - 31090247(+)
Variant Seq	T
Ancestral Allele	T
Ref Seq	C
Minor Allele Frequence	0.115815
Annotation	intron_variant
Variant Effect	intron_variant(ENST00000409363, ENST00000436116, ENST00000614107, ENST00000409489, ENST00000304166, ENST00000396211)
SIFT Annotation	deleterious; tolerated
SIFT Variant Effect	deleterious(ENST00000614107, ENST00000409489, ENST00000396211); tolerated(ENST00000409363, ENST00000304166)
PolyPhen Annotation	benign
PolyPhen Variant Effect	benign(ENST00000614107, ENST00000409363, ENST00000304166, ENST00000409489, ENST00000396211)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	n/a
Chromatin State	Weak transcription
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 1)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
ADCYAP1R1	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I	7p14.3	19(8/11/0)

SNPs in LD with rs11978620 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
LRRC37A4P	No	Adipose Subcutaneous	cis	GTEx