PTSDgene database

SNP Report

Basic Info
Name rs11978620 dbSNP Ensembl
Location 7:31090247 - 31090247(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.115815
Annotation intron_variant
Variant Effect intron_variant(ENST00000409363, ENST00000436116, ENST00000614107, ENST00000409489, ENST00000304166, ENST00000396211)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000614107, ENST00000409489, ENST00000396211); tolerated(ENST00000409363, ENST00000304166)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000614107, ENST00000409363, ENST00000304166, ENST00000409489, ENST00000396211)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I 7p14.3 19(8/11/0)

SNPs in LD with rs11978620 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx