PTSDgene database

SNP Report

Basic Info
Name rs11959427 dbSNP Ensembl
Location 5:148826465 - 148826465(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.204073
Annotation 5_prime_UTR_variant
Variant Effect 5_prime_UTR_variant(ENST00000305988)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000305988)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000305988)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Active TSS;Bivalent/Poised TSS;Flanking Active TSS;Transcr. at gene 5' nd 3';Flanking Bivalent TSS/Enh;Bivalent Enhancer
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADRB2 adrenoceptor beta 2 5q31-q32 1(0/1/0)
CKMT2-AS1 CKMT2 antisense RNA 1 5q14.1 rSNP target
ZCCHC9 zinc finger, CCHC domain containing 9 5q14.1 rSNP target

SNPs in LD with rs11959427 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx