SNP Report
Basic Info
| Name | rs11959427 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 5:148826465 - 148826465(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.204073 | ||
| Annotation | 5_prime_UTR_variant | ||
| Variant Effect | 5_prime_UTR_variant(ENST00000305988) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000305988) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000305988) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region;Chromatin interactive region | ||
| Chromatin State | Active TSS;Bivalent/Poised TSS;Flanking Active TSS;Transcr. at gene 5' nd 3';Flanking Bivalent TSS/Enh;Bivalent Enhancer | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 3)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| ADRB2 | adrenoceptor beta 2 | 5q31-q32 | 1(0/1/0) |
| CKMT2-AS1 | CKMT2 antisense RNA 1 | 5q14.1 | rSNP target |
| ZCCHC9 | zinc finger, CCHC domain containing 9 | 5q14.1 | rSNP target |
SNPs in LD with rs11959427 (count: 0)
SNP related eQTL (count: 1)