PTSDgene database

SNP Report

Basic Info
Name rs11958940 dbSNP Ensembl
Location 5:148821922 - 148821922(+)
Variant Seq T
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.349641
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000305988)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000305988)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000305988)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Enhancers;Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADRB2 adrenoceptor beta 2 5q31-q32 1(0/1/0)

SNPs in LD with rs11958940 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx