SNP Report
Basic Info
| Name | rs11909487 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 21:15690060 - 15690060(+) | ||
| Variant Seq | C | ||
| Ancestral Allele | C | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.41853 | ||
| Annotation | downstream_gene_variant; upstream_gene_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000454157); upstream_gene_variant(ENST00000408570) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000400202, ENST00000318948, ENST00000400199) | ||
| PolyPhen Annotation | benign | ||
| PolyPhen Variant Effect | benign(ENST00000400202, ENST00000318948, ENST00000400199) | ||
| rSNP? | No Link in rVarBase | ||
| Related Regulatory Elements | N.A. | ||
| Chromatin State | N.A. | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Xie, P.,2013 | Lifetime PTSD | Trauma Exposed African Americans: in GWAS,P-value=1.36E-05,i...... Trauma Exposed African Americans: in GWAS,P-value=1.36E-05,in replication,P-value=NT,in combined, P-value=NT. More... | No significant signals were observed in the African American...... No significant signals were observed in the African American part of the sample. Genome-wide association study analyses restricted to trauma-exposed individuals yielded very similar results. More... | Trend |
SNP related genes (count: 2)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| USP25 | ubiquitin specific peptidase 25 | 21q11.2 | 1(0/0/1) |
| RAD23BLP | RAD23 homolog B-like (S. cerevisiae) pseudogene | 21q11 | Mapped by Literature SNP |
SNPs in LD with rs11909487 (count: 0)
SNP related eQTL (count: 1)