PTSDgene database

SNP Report

Basic Info
Name rs11587952 dbSNP Ensembl
Location 1:162338915 - 162338915(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.33147
Annotation downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect downstream_gene_variant(ENST00000516453); upstream_gene_variant(ENST00000384996); intron_variant(ENST00000361897, ENST00000430120, ENST00000530878); NMD_transcript_variant(ENST00000430120)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000430120, ENST00000530878, ENST00000361897)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000430120, ENST00000530878, ENST00000361897)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Strong transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 4)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MIR556 microRNA 556 1q23.3 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
NOS1AP nitric oxide synthase 1 adaptor protein 1q23.3 3(3/0/0)
RNA5SP61 RNA, 5S ribosomal pseudogene 61 1q23.3 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
UAP1 UDP-N-acetylglucosamine pyrophosphorylase 1 1q23.2 rSNP target

SNPs in LD with rs11587952 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
AC005154.8 No Adipose Subcutaneous cis GTEx