PTSDgene database

SNP Report

Basic Info
Name rs11564773 dbSNP Ensembl
Location 5:1396698 - 1396698(+)
Variant Seq C
Ancestral Allele C
Ref Seq T
Minor Allele Frequence 0.0938498
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000512002, ENST00000270349); non_coding_transcript_variant(ENST00000512002)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000270349)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000270349)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 5p15.3 21(11/10/0)

SNPs in LD with rs11564773 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx