PTSDgene database

SNP Report

Basic Info
Name rs11564771 dbSNP Ensembl
Location 5:1398682 - 1398682(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.0660942
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000512002, ENST00000270349); non_coding_transcript_variant(ENST00000512002)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000270349)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000270349)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 5p15.3 21(11/10/0)

SNPs in LD with rs11564771 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx