PTSDgene database

SNP Report

Basic Info
Name rs11564768 dbSNP Ensembl
Location 5:1404351 - 1404351(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.0117812
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000512002); intron_variant(ENST00000270349)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000270349)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000270349)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 5p15.3 21(11/10/0)

SNPs in LD with rs11564768 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx