PTSDgene database

SNP Report

Basic Info
Name rs11564765 dbSNP Ensembl
Location 5:1404807 - 1404807(+)
Variant Seq C
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.0199681
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000512002); intron_variant(ENST00000270349)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000270349)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000270349)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SLC6A3 solute carrier family 6 (neurotransmitter transporter), member 3 5p15.3 21(11/10/0)

SNPs in LD with rs11564765 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx