SNP Report
Basic Info
| Name | rs113508478 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:238413415 - 238413415(+) | ||
| Variant Seq | T | ||
| Ancestral Allele | C | ||
| Ref Seq | C | ||
| Minor Allele Frequence | 0.233826 | ||
| Annotation | upstream_gene_variant | ||
| SIFT Annotation | deleterious | ||
| SIFT Variant Effect | deleterious(ENST00000611898, ENST00000366570) | ||
| PolyPhen Annotation | unknown | ||
| PolyPhen Variant Effect | unknown(ENST00000604646) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | n/a | ||
| Chromatin State | Weak transcription | ||
| No. of Marker's Association Results | 1 (Positive: 0; Negative: 0; Trend: 1) | ||
| Source | Literature | ||
SNP related association results
| Reference | Phenotype | Statistical Values | Author Comments | Marker's Category |
|---|---|---|---|---|
| Logue, M. W.,2013 | PTSD | In discovery group (allele): OR=1.9, P-value=7.4E-06. In discovery group (allele): OR=1.9, P-value=7.4E-06. | It reached the suggestive level of significance in discovery...... It reached the suggestive level of significance in discovery group. More... | Trend |
SNP related genes (count: 0)
SNPs in LD with rs113508478 (count: 0)
SNP related eQTL (count: 1)