PTSDgene database

SNP Report

Basic Info
Name rs11178994 dbSNP Ensembl
Location 12:71935438 - 71935438(+)
Variant Seq T
Ancestral Allele T
Ref Seq G
Minor Allele Frequence 0.353435
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000546576, ENST00000333850)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000333850)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000333850)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;ZNF genes & repeats
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
RAB21 RAB21, member RAS oncogene family 12q21.1 rSNP target
TPH2 tryptophan hydroxylase 2 12q15 10(3/7/0)

SNPs in LD with rs11178994 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx