PTSDgene database

SNP Report

Basic Info
Name rs11168070 dbSNP Ensembl
Location 5:148826364 - 148826364(+)
Variant Seq C
Ancestral Allele C
Ref Seq G
Minor Allele Frequence 0.204073
Annotation 5_prime_UTR_variant
Variant Effect 5_prime_UTR_variant(ENST00000305988)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000305988)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000305988)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;CpG island;Chromatin interactive region
Chromatin State Active TSS;Bivalent/Poised TSS;Flanking Bivalent TSS/Enh;Flanking Active TSS;Transcr. at gene 5' nd 3'
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ADRB2 adrenoceptor beta 2 5q31-q32 1(0/1/0)
CKMT2-AS1 CKMT2 antisense RNA 1 5q14.1 rSNP target
OXA1L oxidase (cytochrome c) assembly 1-like 14q11.2 rSNP target

SNPs in LD with rs11168070 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx