PTSDgene database

SNP Report

Basic Info
Name rs10994158 dbSNP Ensembl
Location 10:60032815 - 60032815(+)
Variant Seq T
Ancestral Allele T
Ref Seq C
Minor Allele Frequence 0.346645
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000503366, ENST00000618374, ENST00000502769, ENST00000480699, ENST00000355288, ENST00000612776, ENST00000489505, ENST00000280772, ENST00000373820, ENST00000373827); non_coding_transcript_variant(ENST00000480699, ENST00000489505)
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000612776, ENST00000355288, ENST00000373820, ENST00000617800, ENST00000503366, ENST00000610321, ENST00000373827, ENST00000280772, ENST00000616444, ENST00000502769)
PolyPhen Annotation unknown; benign; possibly_damaging; probably_damaging
PolyPhen Variant Effect unknown(ENST00000616444); benign(ENST00000355288, ENST00000503366); possibly_damaging(ENST00000502769); probably_damaging(ENST00000612776, ENST00000373820, ENST00000617800, ENST00000610321, ENST00000373827, ENST00000280772)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ANK3 ankyrin 3, node of Ranvier (ankyrin G) 10q21 2(2/0/0)
CCDC6 coiled-coil domain containing 6 10q21.2 rSNP target

SNPs in LD with rs10994158 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx