PTSDgene database

Pathway Enrichment Analysis Protein-Protein Interaction Analysis

SNP Report

Basic Info

Name	rs10994158 dbSNP Ensembl
Location	10:60032815 - 60032815(+)
Variant Seq	T
Ancestral Allele	T
Ref Seq	C
Minor Allele Frequence	0.346645
Annotation	intron_variant; non_coding_transcript_variant
Variant Effect	intron_variant(ENST00000503366, ENST00000618374, ENST00000502769, ENST00000480699, ENST00000355288, ENST00000612776, ENST00000489505, ENST00000280772, ENST00000373820, ENST00000373827); non_coding_transcript_variant(ENST00000480699, ENST00000489505)
SIFT Annotation	deleterious_-_low_confidence
SIFT Variant Effect	deleterious_-_low_confidence(ENST00000612776, ENST00000355288, ENST00000373820, ENST00000617800, ENST00000503366, ENST00000610321, ENST00000373827, ENST00000280772, ENST00000616444, ENST00000502769)
PolyPhen Annotation	unknown; benign; possibly_damaging; probably_damaging
PolyPhen Variant Effect	unknown(ENST00000616444); benign(ENST00000355288, ENST00000503366); possibly_damaging(ENST00000502769); probably_damaging(ENST00000612776, ENST00000373820, ENST00000617800, ENST00000610321, ENST00000373827, ENST00000280772)
rSNP?	Yes Link in rVarBase
Related Regulatory Elements	Chromatin interactive region
Chromatin State	Weak transcription;Enhancers
No. of Marker's Association Results	0 (Positive: 0; Negative: 0; Trend: 0)
Source	LD-proxy

SNP related association results

SNP related genes (count: 2)

Approved Symbol	Approved Name	Location	No. of Association Results (Positive/Negative/Trend)
ANK3	ankyrin 3, node of Ranvier (ankyrin G)	10q21	2(2/0/0)
CCDC6	coiled-coil domain containing 6	10q21.2	rSNP target

SNPs in LD with rs10994158 (count: 0)

SNP related eQTL (count: 1)

Gene Symbol	Gene Existed in PTSDgene?	Tissue	Trans/Cis	Source
RP11-259G18.3	No	Adipose Subcutaneous	cis	GTEx