SNP Report
Basic Info
| Name | rs10919200 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 1:162335370 - 162335370(+) | ||
| Variant Seq | A | ||
| Ancestral Allele | G | ||
| Ref Seq | G | ||
| Minor Allele Frequence | 0.324081 | ||
| Annotation | upstream_gene_variant; intron_variant; NMD_transcript_variant | ||
| Variant Effect | upstream_gene_variant(ENST00000516453); intron_variant(ENST00000530878, ENST00000361897, ENST00000430120); NMD_transcript_variant(ENST00000430120) | ||
| SIFT Annotation | tolerated | ||
| SIFT Variant Effect | tolerated(ENST00000430120, ENST00000530878, ENST00000361897) | ||
| PolyPhen Annotation | possibly_damaging; probably_damaging | ||
| PolyPhen Variant Effect | possibly_damaging(ENST00000530878); probably_damaging(ENST00000430120, ENST00000361897) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | TF binding region;Chromatin interactive region | ||
| Chromatin State | Weak transcription;Active TSS;Enhancers;Strong transcription;Flanking Active TSS | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 4)
| Approved Symbol | Approved Name | Location | No. of Association Results (Positive/Negative/Trend)  |
|---|---|---|---|
| MIR556 | microRNA 556 | 1q23.3 | Mapped by Literature SNP, Mapped by LD-proxy, rSNP target |
| NOS1AP | nitric oxide synthase 1 adaptor protein | 1q23.3 | 3(3/0/0) |
| RNA5SP61 | RNA, 5S ribosomal pseudogene 61 | 1q23.3 | Mapped by Literature SNP, Mapped by LD-proxy, rSNP target |
| UAP1 | UDP-N-acetylglucosamine pyrophosphorylase 1 | 1q23.2 | rSNP target |
SNPs in LD with rs10919200 (count: 0)
SNP related eQTL (count: 1)