SNP Report

Basic Info
Name |
rs10821658
dbSNP
Ensembl
|
Location |
10:60033471 - 60033471(+) |
Variant Seq |
C,T |
Ancestral Allele |
C |
Ref Seq |
G |
Minor Allele Frequence |
0.396366 |
Annotation |
intron_variant; non_coding_transcript_variant
|
Variant Effect |
intron_variant(ENST00000480699, ENST00000489505, ENST00000612776, ENST00000373820, ENST00000373827, ENST00000280772, ENST00000618374, ENST00000503366, ENST00000355288, ENST00000502769); non_coding_transcript_variant(ENST00000480699, ENST00000489505)
|
SIFT Annotation |
tolerated_-_low_confidence; deleterious_-_low_confidence
|
SIFT Variant Effect |
tolerated_-_low_confidence(ENST00000617800); deleterious_-_low_confidence(ENST00000373827, ENST00000612776, ENST00000373820, ENST00000355288, ENST00000502769, ENST00000616444, ENST00000280772, ENST00000503366, ENST00000610321)
|
PolyPhen Annotation |
unknown; benign; possibly_damaging
|
PolyPhen Variant Effect |
unknown(ENST00000616444); benign(ENST00000612776, ENST00000373820, ENST00000355288, ENST00000617800, ENST00000502769, ENST00000280772, ENST00000503366); possibly_damaging(ENST00000373827, ENST00000610321)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription;Enhancers
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs10821658 (count: 0)

SNP related eQTL (count: 1)