PTSDgene database

SNP Report

Basic Info
Name rs10801158 dbSNP Ensembl
Location 1:192820885 - 192820885(+)
Variant Seq C
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.251398
Annotation downstream_gene_variant
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000235382)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000235382)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
RGS2 regulator of G-protein signaling 2 1q31 7(2/5/0)

SNPs in LD with rs10801158 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx