PTSDgene database

SNP Report

Basic Info
Name rs10801151 dbSNP Ensembl
Location 1:192791972 - 192791972(+)
Variant Seq G
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.295727
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000454090)
SIFT Annotation deleterious_-_low_confidence; tolerated_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000235382); tolerated_-_low_confidence(ENST00000235382)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000235382)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
RGS2 regulator of G-protein signaling 2 1q31 7(2/5/0)

SNPs in LD with rs10801151 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LURAP1 No Adipose Subcutaneous cis GTEx