SNP Report

Basic Info
Name |
rs1079727
dbSNP
Ensembl
|
Location |
11:113418460 - 113418460(+) |
Variant Seq |
C |
Ancestral Allele |
T |
Ref Seq |
T |
Minor Allele Frequence |
0.226837 |
Annotation |
upstream_gene_variant; intron_variant; non_coding_transcript_variant
|
Variant Effect |
upstream_gene_variant(ENST00000539420); intron_variant(ENST00000538967, ENST00000543292, ENST00000535984, ENST00000540600, ENST00000362072, ENST00000542968, ENST00000544518, ENST00000346454); non_coding_transcript_variant(ENST00000535984, ENST00000540600)
|
SIFT Annotation |
tolerated
|
SIFT Variant Effect |
tolerated(ENST00000362072, ENST00000544518, ENST00000538967, ENST00000542968, ENST00000346454)
|
PolyPhen Annotation |
probably_damaging; possibly_damaging
|
PolyPhen Variant Effect |
probably_damaging(ENST00000544518, ENST00000538967); possibly_damaging(ENST00000362072, ENST00000542968, ENST00000346454)
|
rSNP? |
Yes
Link in rVarBase
|
Related Regulatory Elements |
n/a
|
Chromatin State |
Weak transcription;Enhancers
|
No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
Source |
LD-proxy |

SNP related association results

SNP related genes (count: 1)

SNPs in LD with rs1079727 (count: 0)

SNP related eQTL (count: 1)