PTSDgene database

SNP Report

Basic Info
Name rs1079595 dbSNP Ensembl
Location 11:113411947 - 113411947(+)
Variant Seq C
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.221446
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000543292, ENST00000539420, ENST00000535984, ENST00000540600); intron_variant(ENST00000542968, ENST00000538967, ENST00000544518, ENST00000546284, ENST00000346454, ENST00000362072); non_coding_transcript_variant(ENST00000546284)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000362072, ENST00000538967, ENST00000542968); tolerated(ENST00000544518)
PolyPhen Annotation probably_damaging; possibly_damaging
PolyPhen Variant Effect probably_damaging(ENST00000538967); possibly_damaging(ENST00000362072, ENST00000544518, ENST00000542968)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
DRD2 dopamine receptor D2 11q23.2 18(11/7/0)

SNPs in LD with rs1079595 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx