PTSDgene database

SNP Report

Basic Info
Name rs10784945 dbSNP Ensembl
Location 12:71977155 - 71977155(+)
Variant Seq A
Ancestral Allele A
Ref Seq G
Minor Allele Frequence 0.120807
Annotation intron_variant
Variant Effect intron_variant(ENST00000333850)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000333850)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000333850)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TPH2 tryptophan hydroxylase 2 12q15 10(3/7/0)

SNPs in LD with rs10784945 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx