PTSDgene database

SNP Report

Basic Info
Name rs10784943 dbSNP Ensembl
Location 12:71965463 - 71965463(+)
Variant Seq G
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.242612
Annotation non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant
Variant Effect non_coding_transcript_exon_variant(ENST00000546576); intron_variant(ENST00000333850); non_coding_transcript_variant(ENST00000546576)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000333850)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000333850)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
TPH2 tryptophan hydroxylase 2 12q15 10(3/7/0)

SNPs in LD with rs10784943 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx