PTSDgene database

SNP Report

Basic Info
Name rs10753790 dbSNP Ensembl
Location 1:162336824 - 162336824(+)
Variant Seq A
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.339856
Annotation upstream_gene_variant; intron_variant; NMD_transcript_variant
Variant Effect upstream_gene_variant(ENST00000516453); intron_variant(ENST00000361897, ENST00000530878, ENST00000430120); NMD_transcript_variant(ENST00000430120)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000361897, ENST00000430120, ENST00000530878)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000361897, ENST00000430120, ENST00000530878)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region;Chromatin interactive region
Chromatin State Weak transcription;Enhancers;Genic enhancers;Flanking Active TSS
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 3)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
MIR556 microRNA 556 1q23.3 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target
NOS1AP nitric oxide synthase 1 adaptor protein 1q23.3 3(3/0/0)
RNA5SP61 RNA, 5S ribosomal pseudogene 61 1q23.3 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs10753790 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
SERGEF Yes Adipose Subcutaneous cis GTEx