PTSDgene database

SNP Report

Basic Info
Name rs10502692 dbSNP Ensembl
Location 18:38460388 - 38460388(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.21905
Annotation downstream_gene_variant
SIFT Annotation deleterious_-_low_confidence; tolerated_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000601392); tolerated_-_low_confidence(ENST00000420428, ENST00000601019, ENST00000591282, ENST00000588597, ENST00000361795, ENST00000591287, ENST00000334919, ENST00000603232)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000420428, ENST00000601019, ENST00000591282, ENST00000588597, ENST00000361795, ENST00000601392, ENST00000591287, ENST00000334919, ENST00000603232)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Enhancers
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Guffanti, G.,2013 PTSD In the DNHS subjects: B=-4.53, P-value=4.46E-06, OR=0.35, 9...... In the DNHS subjects: B=-4.53, P-value=4.46E-06, OR=0.35, 95%CI=0.22-0.55. More... Trend

SNP related genes (count: 0)

SNPs in LD with rs10502692 (count: 10)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 10)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx