SNP Report
Basic Info
| Name |
rs9787863
dbSNP
Ensembl
|
| Location |
11:17992343 - 17992343(+) |
| Variant Seq |
T |
| Ancestral Allele |
C |
| Ref Seq |
C |
| Minor Allele Frequence |
0.302117 |
| Annotation |
downstream_gene_variant; upstream_gene_variant; intron_variant; NMD_transcript_variant; non_coding_transcript_variant
|
| Variant Effect |
downstream_gene_variant(ENST00000530925, ENST00000533328); upstream_gene_variant(ENST00000533241); intron_variant(ENST00000528200, ENST00000525422, ENST00000532546, ENST00000529440, ENST00000532389, ENST00000265965, ENST00000527494, ENST00000532265, ENST00000525920, ENST00000529728, ENST00000529151, ENST00000530613); NMD_transcript_variant(ENST00000525422, ENST00000532546, ENST00000527494); non_coding_transcript_variant(ENST00000529440)
|
| SIFT Annotation |
tolerated
|
| SIFT Variant Effect |
tolerated(ENST00000529151, ENST00000532389, ENST00000532265, ENST00000525422, ENST00000265965, ENST00000530613, ENST00000529728, ENST00000528200, ENST00000532546, ENST00000525920)
|
| PolyPhen Annotation |
benign; possibly_damaging
|
| PolyPhen Variant Effect |
benign(ENST00000532389, ENST00000532265, ENST00000265965, ENST00000530613, ENST00000528200); possibly_damaging(ENST00000529151, ENST00000525422, ENST00000529728, ENST00000532546, ENST00000525920)
|
| rSNP? |
Yes
Link in rVarBase
|
| Related Regulatory Elements |
TF binding region;Chromatin interactive region
|
| Chromatin State |
Weak transcription;Strong transcription;Enhancers
|
| No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
| Source |
LD-proxy |
SNP related association results
SNP related genes (count: 2)
SNPs in LD with rs9787863 (count: 0)
SNP related eQTL (count: 1)
