PTSDgene database

SNP Report

Basic Info
Name rs864354 dbSNP Ensembl
Location 5:143255143 - 143255143(+)
Variant Seq G
Ancestral Allele G
Ref Seq T
Minor Allele Frequence 0.386182
Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000378004, ENST00000418236, ENST00000443674, ENST00000274498)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000378004, ENST00000418236); possibly_damaging(ENST00000443674, ENST00000274498)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 0)

SNPs in LD with rs864354 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
CRHR1-IT1 Yes Adipose Subcutaneous cis GTEx