PTSDgene database

SNP Report

Basic Info
Name rs8034769 dbSNP Ensembl
Location 15:54445582 - 54445582(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.0916534
Annotation intron_variant
Variant Effect intron_variant(ENST00000260323)
SIFT Annotation deleterious_-_low_confidence
SIFT Variant Effect deleterious_-_low_confidence(ENST00000260323)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000260323)
rSNP? No Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Inactive region
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
UNC13C unc-13 homolog C (C. elegans) 15q21.3 1(0/0/1)

SNPs in LD with rs8034769 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx