PTSDgene database

SNP Report

Basic Info
Name rs7947771 dbSNP Ensembl
Location 11:34477299 - 34477299(+)
Variant Seq T
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.378594
Annotation downstream_gene_variant
Variant Effect downstream_gene_variant(ENST00000312319, ENST00000429939, ENST00000620316, ENST00000257832)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000429939, ENST00000257832, ENST00000620316, ENST00000312319)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000429939, ENST00000257832, ENST00000620316, ENST00000312319)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ELF5 E74-like factor 5 (ets domain transcription factor) 11p13-p12 Mapped by Literature SNP, Mapped by LD-proxy

SNPs in LD with rs7947771 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx