PTSDgene database

SNP Report

Basic Info
Name rs7123797 dbSNP Ensembl
Location 11:113391849 - 113391849(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.449481
Annotation upstream_gene_variant; intron_variant
Variant Effect upstream_gene_variant(ENST00000542948); intron_variant(ENST00000303941)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(ENST00000303941)
PolyPhen Annotation benign
PolyPhen Variant Effect benign(ENST00000303941)
rSNP? Yes Link in rVarBase
Related Regulatory Elements TF binding region
Chromatin State Weak transcription
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 1)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
ANKK1 ankyrin repeat and kinase domain containing 1 11q23.2 Mapped by Literature SNP, Mapped by LD-proxy, rSNP target

SNPs in LD with rs7123797 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx