PTSDgene database

SNP Report

Basic Info
Name rs6683050 dbSNP Ensembl
Location 1:194350010 - 194350010(+)
Variant Seq A
Ancestral Allele T
Ref Seq T
Minor Allele Frequence 0.177117
Annotation upstream_gene_variant
Variant Effect upstream_gene_variant(ENST00000435554)
SIFT Annotation tolerated
SIFT Variant Effect tolerated(LRG_507t1, ENST00000367435)
PolyPhen Annotation possibly_damaging
PolyPhen Variant Effect possibly_damaging(LRG_507t1, ENST00000367435)
rSNP? No Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Inactive region
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs6683050 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-259G18.3 No Adipose Subcutaneous cis GTEx