PTSDgene database

SNP Report

Basic Info
Name rs62054427 dbSNP Ensembl
Location 17:45743696 - 45743696(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.0954473
Annotation intron_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000587305, ENST00000634540); non_coding_transcript_variant(ENST00000587305)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420)
rSNP? Yes Link in rVarBase
Related Regulatory Elements n/a
Chromatin State Bivalent Enhancer;Weak transcription;Enhancers
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results

SNP related genes (count: 0)

SNPs in LD with rs62054427 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx