SNP Report
Basic Info
| Name |
rs62054395
dbSNP
Ensembl
|
| Location |
17:45733694 - 45733694(+) |
| Variant Seq |
G |
| Ancestral Allele |
G |
| Ref Seq |
T |
| Minor Allele Frequence |
0.0952476 |
| Annotation |
upstream_gene_variant; intron_variant; non_coding_transcript_variant
|
| Variant Effect |
upstream_gene_variant(ENST00000578936); intron_variant(ENST00000587305, ENST00000580347, ENST00000634540); non_coding_transcript_variant(ENST00000587305, ENST00000580347)
|
| SIFT Annotation |
deleterious; tolerated
|
| SIFT Variant Effect |
deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780)
|
| PolyPhen Annotation |
benign; possibly_damaging
|
| PolyPhen Variant Effect |
benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420)
|
| rSNP? |
Yes
Link in rVarBase
|
| Related Regulatory Elements |
n/a
|
| Chromatin State |
Weak transcription;Enhancers
|
| No. of Marker's Association Results |
0 (Positive: 0; Negative: 0; Trend: 0) |
| Source |
LD-proxy |
SNP related association results
SNP related genes (count: 0)
SNPs in LD with rs62054395 (count: 0)
SNP related eQTL (count: 1)
