SNP Report
Basic Info
| Name | rs62054393 dbSNP Ensembl | ||
|---|---|---|---|
| Location | 17:45731898 - 45731898(+) | ||
| Variant Seq | G | ||
| Ancestral Allele | T | ||
| Ref Seq | T | ||
| Minor Allele Frequence | 0.0952476 | ||
| Annotation | downstream_gene_variant; non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant | ||
| Variant Effect | downstream_gene_variant(ENST00000580347); non_coding_transcript_exon_variant(ENST00000578936); intron_variant(ENST00000634540, ENST00000587305); non_coding_transcript_variant(ENST00000587305, ENST00000578936) | ||
| SIFT Annotation | deleterious; tolerated | ||
| SIFT Variant Effect | deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780) | ||
| PolyPhen Annotation | benign; possibly_damaging | ||
| PolyPhen Variant Effect | benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420) | ||
| rSNP? | Yes Link in rVarBase | ||
| Related Regulatory Elements | lncRNA | ||
| Chromatin State | ZNF genes & repeats | ||
| No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
| Source | LD-proxy | ||
SNP related association results
SNP related genes (count: 0)
SNPs in LD with rs62054393 (count: 0)
SNP related eQTL (count: 1)