SNP Report
Name | rs62054393 dbSNP Ensembl | ||
---|---|---|---|
Location | 17:45731898 - 45731898(+) | ||
Variant Seq | G | ||
Ancestral Allele | T | ||
Ref Seq | T | ||
Minor Allele Frequence | 0.0952476 | ||
Annotation | downstream_gene_variant; non_coding_transcript_exon_variant; intron_variant; non_coding_transcript_variant | ||
Variant Effect | downstream_gene_variant(ENST00000580347); non_coding_transcript_exon_variant(ENST00000578936); intron_variant(ENST00000634540, ENST00000587305); non_coding_transcript_variant(ENST00000587305, ENST00000578936) | ||
SIFT Annotation | deleterious; tolerated | ||
SIFT Variant Effect | deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780) | ||
PolyPhen Annotation | benign; possibly_damaging | ||
PolyPhen Variant Effect | benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420) | ||
rSNP? | Yes Link in rVarBase | ||
Related Regulatory Elements | lncRNA | ||
Chromatin State | ZNF genes & repeats | ||
No. of Marker's Association Results | 0 (Positive: 0; Negative: 0; Trend: 0) | ||
Source | LD-proxy |