PTSDgene database

SNP Report

Basic Info
Name rs61884494 dbSNP Ensembl
Location 11:17973378 - 17973378(+)
Variant Seq T
Ancestral Allele C
Ref Seq C
Minor Allele Frequence 0.103834
Annotation intron_variant; NMD_transcript_variant; non_coding_transcript_variant
Variant Effect intron_variant(ENST00000525920, ENST00000532546, ENST00000529440, ENST00000529151, ENST00000529728, ENST00000528200, ENST00000527494, ENST00000533241, ENST00000525422, ENST00000265965, ENST00000532265); NMD_transcript_variant(ENST00000532546, ENST00000527494, ENST00000525422); non_coding_transcript_variant(ENST00000529440)
SIFT Annotation deleterious
SIFT Variant Effect deleterious(ENST00000265965, ENST00000533241, ENST00000525422, ENST00000529151, ENST00000529728)
PolyPhen Annotation probably_damaging
PolyPhen Variant Effect probably_damaging(ENST00000265965, ENST00000533241, ENST00000525422, ENST00000529151, ENST00000529728)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Weak transcription;Enhancers;Strong transcription;ZNF genes & repeats
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 2)
Approved Symbol Approved Name Location No. of Association Results (Positive/Negative/Trend)
SERGEF secretion regulating guanine nucleotide exchange factor 11p14.3 Mapped by LD-proxy, rSNP target
KCNC1 potassium channel, voltage gated Shaw related subfamily C, member 1 11p15 rSNP target

SNPs in LD with rs61884494 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
LRRC37A4P No Adipose Subcutaneous cis GTEx