PTSDgene database

SNP Report

Basic Info
Name rs6080152 dbSNP Ensembl
Location 20:16161346 - 16161346(+)
Variant Seq T
Ancestral Allele G
Ref Seq G
Minor Allele Frequence 0.341653
Annotation downstream_gene_variant
SIFT Annotation deleterious_-_low_confidence; deleterious
SIFT Variant Effect deleterious_-_low_confidence(ENST00000407045); deleterious(ENST00000378058, ENST00000402914)
PolyPhen Annotation possibly_damaging; probably_damaging
PolyPhen Variant Effect possibly_damaging(ENST00000407045); probably_damaging(ENST00000378058, ENST00000402914)
rSNP? No Link in rVarBase
Related Regulatory Elements N.A.
Chromatin State N.A.
No. of Marker's Association Results 1 (Positive: 0; Negative: 0; Trend: 1)
Source Literature

SNP related association results
Normal genetic study related association results (count: 1)
Reference Phenotype Statistical Values Author Comments Marker's Category
Almli, L. M.,2015 PTSD Symptoms as measured by the quantitave CAPS scores In (SBPBC cohort) discovery stage: (sex and top three princ...... In (SBPBC cohort) discovery stage: (sex and top three principal components as covariates) B (SE)=-18.95 (3.90), P-value=3.14E-06. More... None None Trend


SNP related genes (count: 0)

SNPs in LD with rs6080152 (count: 4)
The LD data used here is based on 1000 Genome Phase I. LD SNP pairs were selected with a threshold r2<=0.8.

Literature-origin SNPs (count: 0)

LD-proxies (count: 4)


SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
RP11-707O23.5 No Adipose Subcutaneous cis GTEx