PTSDgene database

SNP Report

Basic Info
Name rs55947210 dbSNP Ensembl
Location 17:45731397 - 45731397(+)
Variant Seq G
Ancestral Allele A
Ref Seq A
Minor Allele Frequence 0.0952476
Annotation downstream_gene_variant; intron_variant; non_coding_transcript_variant
Variant Effect downstream_gene_variant(ENST00000578936, ENST00000580347); intron_variant(ENST00000587305, ENST00000634540); non_coding_transcript_variant(ENST00000587305)
SIFT Annotation deleterious; tolerated
SIFT Variant Effect deleterious(ENST00000430334); tolerated(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780)
PolyPhen Annotation benign; possibly_damaging
PolyPhen Variant Effect benign(ENST00000430334, ENST00000581448, ENST00000584420, ENST00000589780); possibly_damaging(ENST00000430334, ENST00000584420)
rSNP? Yes Link in rVarBase
Related Regulatory Elements Chromatin interactive region
Chromatin State Inactive region
No. of Marker's Association Results 0 (Positive: 0; Negative: 0; Trend: 0)
Source LD-proxy

SNP related association results


SNP related genes (count: 0)

SNPs in LD with rs55947210 (count: 0)

SNP related eQTL (count: 1)
Gene Symbol Gene Existed in PTSDgene? Tissue Trans/Cis Source
DND1P1 No Adipose Subcutaneous cis GTEx